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Thallium in PDB 1r3j: Potassium Channel Kcsa-Fab Complex in High Concentration of Tl+

Protein crystallography data

The structure of Potassium Channel Kcsa-Fab Complex in High Concentration of Tl+, PDB code: 1r3j was solved by Y.Zhou, R.Mackinnon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.66 / 1.90
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 154.740, 154.740, 76.380, 90.00, 90.00, 90.00
R / Rfree (%) 20.8 / 22.8

Thallium Binding Sites:

The binding sites of Thallium atom in the Potassium Channel Kcsa-Fab Complex in High Concentration of Tl+ (pdb code 1r3j). This binding sites where shown within 5.0 Angstroms radius around Thallium atom.
In total 5 binding sites of Thallium where determined in the Potassium Channel Kcsa-Fab Complex in High Concentration of Tl+, PDB code: 1r3j:
Jump to Thallium binding site number: 1; 2; 3; 4; 5;

Thallium binding site 1 out of 5 in 1r3j

Go back to Thallium Binding Sites List in 1r3j
Thallium binding site 1 out of 5 in the Potassium Channel Kcsa-Fab Complex in High Concentration of Tl+


Mono view


Stereo pair view

A full contact list of Thallium with other atoms in the Tl binding site number 1 of Potassium Channel Kcsa-Fab Complex in High Concentration of Tl+ within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Tl401

b:22.9
occ:0.25
O C:TYR78 2.7 15.6 1.0
O C:HOH536 3.4 40.7 0.2
O C:GLY77 3.5 10.5 1.0
TL C:TL402 3.5 22.1 0.2
C C:TYR78 3.5 18.8 1.0
N C:GLY79 4.2 17.1 1.0
CA C:TYR78 4.3 17.8 1.0
CA C:GLY79 4.3 18.0 1.0
C C:GLY77 4.5 16.9 1.0
N C:TYR78 4.9 13.4 1.0

Thallium binding site 2 out of 5 in 1r3j

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Thallium binding site 2 out of 5 in the Potassium Channel Kcsa-Fab Complex in High Concentration of Tl+


Mono view


Stereo pair view

A full contact list of Thallium with other atoms in the Tl binding site number 2 of Potassium Channel Kcsa-Fab Complex in High Concentration of Tl+ within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Tl402

b:22.1
occ:0.25
O C:GLY77 2.7 10.5 1.0
O C:VAL76 3.1 15.4 1.0
TL C:TL403 3.3 22.4 0.2
TL C:TL401 3.5 22.9 0.2
C C:GLY77 3.6 16.9 1.0
C C:VAL76 4.2 17.8 1.0
CA C:GLY77 4.3 15.0 1.0
N C:TYR78 4.5 13.4 1.0
CA C:TYR78 4.7 17.8 1.0
N C:GLY77 4.7 15.9 1.0
C C:TYR78 4.9 18.8 1.0
O C:TYR78 4.9 15.6 1.0

Thallium binding site 3 out of 5 in 1r3j

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Thallium binding site 3 out of 5 in the Potassium Channel Kcsa-Fab Complex in High Concentration of Tl+


Mono view


Stereo pair view

A full contact list of Thallium with other atoms in the Tl binding site number 3 of Potassium Channel Kcsa-Fab Complex in High Concentration of Tl+ within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Tl403

b:22.4
occ:0.25
O C:THR75 2.8 17.1 1.0
O C:VAL76 3.0 15.4 1.0
TL C:TL402 3.3 22.1 0.2
TL C:TL404 3.5 22.9 0.2
C C:VAL76 3.7 17.8 1.0
C C:THR75 4.0 19.0 1.0
CA C:VAL76 4.1 16.9 1.0
N C:VAL76 4.5 15.2 1.0
N C:GLY77 4.6 15.9 1.0
O C:GLY77 5.0 10.5 1.0

Thallium binding site 4 out of 5 in 1r3j

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Thallium binding site 4 out of 5 in the Potassium Channel Kcsa-Fab Complex in High Concentration of Tl+


Mono view


Stereo pair view

A full contact list of Thallium with other atoms in the Tl binding site number 4 of Potassium Channel Kcsa-Fab Complex in High Concentration of Tl+ within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Tl404

b:22.9
occ:0.25
O C:HOH524 2.7 45.0 0.2
OG1 C:THR75 2.9 18.9 1.0
O C:THR75 3.1 17.1 1.0
TL C:TL403 3.5 22.4 0.2
CB C:THR75 3.6 20.7 1.0
C C:THR75 3.9 19.0 1.0
CA C:THR75 4.4 17.8 1.0
CG2 C:THR75 4.8 20.9 1.0
O C:THR74 4.8 15.2 1.0
N C:VAL76 4.9 15.2 1.0

Thallium binding site 5 out of 5 in 1r3j

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Thallium binding site 5 out of 5 in the Potassium Channel Kcsa-Fab Complex in High Concentration of Tl+


Mono view


Stereo pair view

A full contact list of Thallium with other atoms in the Tl binding site number 5 of Potassium Channel Kcsa-Fab Complex in High Concentration of Tl+ within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Tl405

b:34.5
occ:0.25
O C:HOH528 3.2 48.0 1.0
O C:HOH535 4.3 59.5 1.0
O C:HOH524 4.5 45.0 0.2

Reference:

Y.Zhou, R.Mackinnon. The Occupancy of Ions in the K+ Selectivity Filter: Charge Balance and Coupling of Ion Binding to A Protein Conformational Change Underlie High Conduction Rates J.Mol.Biol. V. 333 965 2003.
ISSN: ISSN 0022-2836
PubMed: 14583193
DOI: 10.1016/J.JMB.2003.09.022
Page generated: Fri Oct 11 09:31:55 2024

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