Thallium in PDB 2ynj: Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography
Other elements in 2ynj:
The structure of Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography also contains other interesting chemical elements:
Thallium Binding Sites:
Thallium binding site 1 out
of 56 in 2ynj
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Thallium Binding Sites List in 2ynj
Thallium binding site 1 out
of 56 in the Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography
Mono view
Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 1 of Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Tl550
b:0.2
occ:1.00
|
TL
|
H:TL554
|
0.5
|
0.2
|
0.3
|
OE2
|
A:GLU483
|
2.5
|
0.2
|
1.0
|
O
|
A:CYS458
|
2.9
|
0.2
|
1.0
|
OD1
|
H:ASN112
|
3.2
|
0.2
|
1.0
|
CD
|
A:GLU483
|
3.7
|
0.2
|
1.0
|
OD2
|
H:ASP115
|
3.8
|
0.2
|
1.0
|
C
|
A:CYS458
|
4.1
|
0.2
|
1.0
|
OE2
|
A:GLU460
|
4.4
|
0.2
|
1.0
|
CG
|
H:ASN112
|
4.4
|
0.2
|
1.0
|
SG
|
A:CYS458
|
4.4
|
0.2
|
1.0
|
OE1
|
A:GLU483
|
4.5
|
0.2
|
1.0
|
CG
|
H:ASP115
|
4.6
|
0.2
|
1.0
|
CG
|
A:GLU483
|
4.7
|
0.2
|
1.0
|
CA
|
A:GLY459
|
4.8
|
0.2
|
1.0
|
OD1
|
H:ASP115
|
4.8
|
0.2
|
1.0
|
CG
|
A:GLU460
|
4.8
|
0.2
|
1.0
|
N
|
A:GLY459
|
4.9
|
0.2
|
1.0
|
ND2
|
H:ASN433
|
4.9
|
0.2
|
1.0
|
CB
|
H:ASN112
|
5.0
|
0.2
|
1.0
|
|
Thallium binding site 2 out
of 56 in 2ynj
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Thallium Binding Sites List in 2ynj
Thallium binding site 2 out
of 56 in the Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography
Mono view
Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 2 of Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Tl551
b:0.2
occ:1.00
|
O
|
A:THR30
|
2.3
|
0.2
|
1.0
|
O3G
|
A:AGS549
|
2.8
|
0.2
|
1.0
|
O
|
A:LYS51
|
2.9
|
0.2
|
1.0
|
O1A
|
A:AGS549
|
3.0
|
0.2
|
1.0
|
OG1
|
A:THR30
|
3.3
|
0.2
|
1.0
|
C
|
A:THR30
|
3.3
|
0.2
|
1.0
|
CB
|
A:THR30
|
3.6
|
0.2
|
1.0
|
OG1
|
A:THR90
|
3.6
|
0.2
|
1.0
|
O3A
|
A:AGS549
|
3.8
|
0.2
|
1.0
|
PA
|
A:AGS549
|
4.0
|
0.2
|
1.0
|
C
|
A:LYS51
|
4.0
|
0.2
|
1.0
|
CA
|
A:THR30
|
4.1
|
0.2
|
1.0
|
PG
|
A:AGS549
|
4.1
|
0.2
|
1.0
|
N
|
A:GLY53
|
4.1
|
0.2
|
1.0
|
N
|
A:LEU31
|
4.3
|
0.2
|
1.0
|
CB
|
A:THR90
|
4.5
|
0.2
|
1.0
|
CA
|
A:LEU31
|
4.5
|
0.2
|
1.0
|
O3B
|
A:AGS549
|
4.6
|
0.2
|
1.0
|
CG2
|
A:THR90
|
4.6
|
0.2
|
1.0
|
CB
|
A:LYS51
|
4.7
|
0.2
|
1.0
|
CA
|
A:GLY53
|
4.8
|
0.2
|
1.0
|
O2G
|
A:AGS549
|
4.8
|
0.2
|
1.0
|
CA
|
A:ASP52
|
4.8
|
0.2
|
1.0
|
O2A
|
A:AGS549
|
4.8
|
0.2
|
1.0
|
N
|
A:ASP52
|
4.8
|
0.2
|
1.0
|
CA
|
A:LYS51
|
4.9
|
0.2
|
1.0
|
C
|
A:ASP52
|
4.9
|
0.2
|
1.0
|
CG2
|
A:THR30
|
4.9
|
0.2
|
1.0
|
PB
|
A:AGS549
|
5.0
|
0.2
|
1.0
|
|
Thallium binding site 3 out
of 56 in 2ynj
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Thallium Binding Sites List in 2ynj
Thallium binding site 3 out
of 56 in the Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography
Mono view
Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 3 of Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Tl552
b:0.2
occ:1.00
|
O
|
A:SER217
|
3.0
|
0.2
|
1.0
|
OE1
|
A:GLN319
|
3.3
|
0.2
|
1.0
|
CE1
|
A:PHE219
|
3.6
|
0.2
|
1.0
|
CD1
|
A:PHE219
|
3.6
|
0.2
|
1.0
|
CG
|
A:GLN319
|
3.6
|
0.2
|
1.0
|
C
|
A:SER217
|
3.7
|
0.2
|
1.0
|
C
|
A:PRO218
|
3.7
|
0.2
|
1.0
|
CZ
|
A:PHE219
|
3.8
|
0.2
|
1.0
|
CG
|
A:PHE219
|
3.8
|
0.2
|
1.0
|
O
|
A:PRO218
|
3.8
|
0.2
|
1.0
|
N
|
A:PHE219
|
3.8
|
0.2
|
1.0
|
CB
|
A:GLN319
|
3.9
|
0.2
|
1.0
|
CD
|
A:GLN319
|
3.9
|
0.2
|
1.0
|
CD2
|
A:PHE219
|
3.9
|
0.2
|
1.0
|
CE2
|
A:PHE219
|
3.9
|
0.2
|
1.0
|
CD
|
A:LYS245
|
4.0
|
0.2
|
1.0
|
CA
|
A:PHE219
|
4.1
|
0.2
|
1.0
|
NZ
|
A:LYS245
|
4.3
|
0.2
|
1.0
|
N
|
A:PRO218
|
4.3
|
0.2
|
1.0
|
CA
|
A:GLN319
|
4.4
|
0.2
|
1.0
|
CA
|
A:PRO218
|
4.4
|
0.2
|
1.0
|
CB
|
A:PHE219
|
4.6
|
0.2
|
1.0
|
CB
|
A:SER217
|
4.6
|
0.2
|
1.0
|
CA
|
A:SER217
|
4.6
|
0.2
|
1.0
|
O
|
A:ALA320
|
4.6
|
0.2
|
1.0
|
CE
|
A:LYS245
|
4.8
|
0.2
|
1.0
|
N
|
A:ALA320
|
4.8
|
0.2
|
1.0
|
|
Thallium binding site 4 out
of 56 in 2ynj
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Thallium Binding Sites List in 2ynj
Thallium binding site 4 out
of 56 in the Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography
Mono view
Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 4 of Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Tl554
b:0.2
occ:1.00
|
TL
|
B:TL550
|
0.5
|
0.2
|
1.0
|
OE2
|
B:GLU483
|
2.8
|
0.2
|
1.0
|
OD1
|
A:ASN112
|
3.2
|
0.2
|
1.0
|
O
|
B:CYS458
|
3.3
|
0.2
|
1.0
|
OD2
|
A:ASP115
|
3.4
|
0.2
|
1.0
|
CD
|
B:GLU483
|
4.0
|
0.2
|
1.0
|
CG
|
A:ASN112
|
4.2
|
0.2
|
1.0
|
OE2
|
B:GLU460
|
4.4
|
0.2
|
1.0
|
CG
|
A:ASP115
|
4.4
|
0.2
|
1.0
|
C
|
B:CYS458
|
4.5
|
0.2
|
1.0
|
ND2
|
A:ASN433
|
4.6
|
0.2
|
1.0
|
OE1
|
B:GLU483
|
4.6
|
0.2
|
1.0
|
OD1
|
A:ASP115
|
4.7
|
0.2
|
1.0
|
CB
|
A:ASN112
|
4.7
|
0.2
|
1.0
|
CA
|
B:GLY459
|
4.9
|
0.2
|
1.0
|
SG
|
B:CYS458
|
5.0
|
0.2
|
1.0
|
|
Thallium binding site 5 out
of 56 in 2ynj
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Thallium Binding Sites List in 2ynj
Thallium binding site 5 out
of 56 in the Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography
Mono view
Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 5 of Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Tl550
b:0.2
occ:1.00
|
TL
|
A:TL554
|
0.5
|
0.2
|
1.0
|
OE2
|
B:GLU483
|
2.5
|
0.2
|
1.0
|
O
|
B:CYS458
|
2.9
|
0.2
|
1.0
|
OD1
|
A:ASN112
|
3.2
|
0.2
|
1.0
|
CD
|
B:GLU483
|
3.7
|
0.2
|
1.0
|
OD2
|
A:ASP115
|
3.8
|
0.2
|
1.0
|
C
|
B:CYS458
|
4.1
|
0.2
|
1.0
|
OE2
|
B:GLU460
|
4.4
|
0.2
|
1.0
|
CG
|
A:ASN112
|
4.4
|
0.2
|
1.0
|
SG
|
B:CYS458
|
4.4
|
0.2
|
1.0
|
OE1
|
B:GLU483
|
4.5
|
0.2
|
1.0
|
CG
|
A:ASP115
|
4.6
|
0.2
|
1.0
|
CG
|
B:GLU483
|
4.7
|
0.2
|
1.0
|
CA
|
B:GLY459
|
4.8
|
0.2
|
1.0
|
OD1
|
A:ASP115
|
4.8
|
0.2
|
1.0
|
CG
|
B:GLU460
|
4.8
|
0.2
|
1.0
|
N
|
B:GLY459
|
4.9
|
0.2
|
1.0
|
ND2
|
A:ASN433
|
4.9
|
0.2
|
1.0
|
CB
|
A:ASN112
|
5.0
|
0.2
|
1.0
|
|
Thallium binding site 6 out
of 56 in 2ynj
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Thallium Binding Sites List in 2ynj
Thallium binding site 6 out
of 56 in the Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography
Mono view
Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 6 of Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Tl551
b:0.2
occ:1.00
|
O
|
B:THR30
|
2.3
|
0.2
|
1.0
|
O3G
|
B:AGS549
|
2.8
|
0.2
|
1.0
|
O
|
B:LYS51
|
2.9
|
0.2
|
1.0
|
O1A
|
B:AGS549
|
3.0
|
0.2
|
1.0
|
OG1
|
B:THR30
|
3.3
|
0.2
|
1.0
|
C
|
B:THR30
|
3.3
|
0.2
|
1.0
|
CB
|
B:THR30
|
3.6
|
0.2
|
1.0
|
OG1
|
B:THR90
|
3.6
|
0.2
|
1.0
|
O3A
|
B:AGS549
|
3.8
|
0.2
|
1.0
|
PA
|
B:AGS549
|
4.0
|
0.2
|
1.0
|
C
|
B:LYS51
|
4.0
|
0.2
|
1.0
|
CA
|
B:THR30
|
4.1
|
0.2
|
1.0
|
PG
|
B:AGS549
|
4.1
|
0.2
|
1.0
|
N
|
B:GLY53
|
4.1
|
0.2
|
1.0
|
N
|
B:LEU31
|
4.3
|
0.2
|
1.0
|
CB
|
B:THR90
|
4.5
|
0.2
|
1.0
|
CA
|
B:LEU31
|
4.5
|
0.2
|
1.0
|
O3B
|
B:AGS549
|
4.6
|
0.2
|
1.0
|
CG2
|
B:THR90
|
4.6
|
0.2
|
1.0
|
CB
|
B:LYS51
|
4.7
|
0.2
|
1.0
|
CA
|
B:GLY53
|
4.8
|
0.2
|
1.0
|
O2G
|
B:AGS549
|
4.8
|
0.2
|
1.0
|
CA
|
B:ASP52
|
4.8
|
0.2
|
1.0
|
O2A
|
B:AGS549
|
4.8
|
0.2
|
1.0
|
N
|
B:ASP52
|
4.8
|
0.2
|
1.0
|
CA
|
B:LYS51
|
4.9
|
0.2
|
1.0
|
C
|
B:ASP52
|
4.9
|
0.2
|
1.0
|
CG2
|
B:THR30
|
4.9
|
0.2
|
1.0
|
PB
|
B:AGS549
|
5.0
|
0.2
|
1.0
|
|
Thallium binding site 7 out
of 56 in 2ynj
Go back to
Thallium Binding Sites List in 2ynj
Thallium binding site 7 out
of 56 in the Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography
Mono view
Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 7 of Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Tl552
b:0.2
occ:1.00
|
O
|
B:SER217
|
3.0
|
0.2
|
1.0
|
OE1
|
B:GLN319
|
3.3
|
0.2
|
1.0
|
CE1
|
B:PHE219
|
3.6
|
0.2
|
1.0
|
CD1
|
B:PHE219
|
3.6
|
0.2
|
1.0
|
CG
|
B:GLN319
|
3.6
|
0.2
|
1.0
|
C
|
B:SER217
|
3.7
|
0.2
|
1.0
|
C
|
B:PRO218
|
3.7
|
0.2
|
1.0
|
CZ
|
B:PHE219
|
3.8
|
0.2
|
1.0
|
CG
|
B:PHE219
|
3.8
|
0.2
|
1.0
|
O
|
B:PRO218
|
3.8
|
0.2
|
1.0
|
N
|
B:PHE219
|
3.8
|
0.2
|
1.0
|
CB
|
B:GLN319
|
3.9
|
0.2
|
1.0
|
CD
|
B:GLN319
|
3.9
|
0.2
|
1.0
|
CD2
|
B:PHE219
|
3.9
|
0.2
|
1.0
|
CE2
|
B:PHE219
|
3.9
|
0.2
|
1.0
|
CD
|
B:LYS245
|
4.0
|
0.2
|
1.0
|
CA
|
B:PHE219
|
4.1
|
0.2
|
1.0
|
NZ
|
B:LYS245
|
4.3
|
0.2
|
1.0
|
N
|
B:PRO218
|
4.3
|
0.2
|
1.0
|
CA
|
B:GLN319
|
4.4
|
0.2
|
1.0
|
CA
|
B:PRO218
|
4.4
|
0.2
|
1.0
|
CB
|
B:PHE219
|
4.6
|
0.2
|
1.0
|
CB
|
B:SER217
|
4.6
|
0.2
|
1.0
|
CA
|
B:SER217
|
4.6
|
0.2
|
1.0
|
O
|
B:ALA320
|
4.6
|
0.2
|
1.0
|
CE
|
B:LYS245
|
4.8
|
0.2
|
1.0
|
N
|
B:ALA320
|
4.8
|
0.2
|
1.0
|
|
Thallium binding site 8 out
of 56 in 2ynj
Go back to
Thallium Binding Sites List in 2ynj
Thallium binding site 8 out
of 56 in the Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography
Mono view
Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 8 of Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Tl554
b:0.2
occ:1.00
|
TL
|
C:TL550
|
0.5
|
0.2
|
1.0
|
OE2
|
C:GLU483
|
2.8
|
0.2
|
1.0
|
OD1
|
B:ASN112
|
3.2
|
0.2
|
1.0
|
O
|
C:CYS458
|
3.3
|
0.2
|
1.0
|
OD2
|
B:ASP115
|
3.4
|
0.2
|
1.0
|
CD
|
C:GLU483
|
4.0
|
0.2
|
1.0
|
CG
|
B:ASN112
|
4.2
|
0.2
|
1.0
|
OE2
|
C:GLU460
|
4.4
|
0.2
|
1.0
|
CG
|
B:ASP115
|
4.4
|
0.2
|
1.0
|
C
|
C:CYS458
|
4.5
|
0.2
|
1.0
|
ND2
|
B:ASN433
|
4.6
|
0.2
|
1.0
|
OE1
|
C:GLU483
|
4.6
|
0.2
|
1.0
|
OD1
|
B:ASP115
|
4.7
|
0.2
|
1.0
|
CB
|
B:ASN112
|
4.7
|
0.2
|
1.0
|
CA
|
C:GLY459
|
4.9
|
0.2
|
1.0
|
SG
|
C:CYS458
|
5.0
|
0.2
|
1.0
|
|
Thallium binding site 9 out
of 56 in 2ynj
Go back to
Thallium Binding Sites List in 2ynj
Thallium binding site 9 out
of 56 in the Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography
Mono view
Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 9 of Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Tl550
b:0.2
occ:1.00
|
TL
|
B:TL554
|
0.5
|
0.2
|
1.0
|
OE2
|
C:GLU483
|
2.5
|
0.2
|
1.0
|
O
|
C:CYS458
|
2.9
|
0.2
|
1.0
|
OD1
|
B:ASN112
|
3.2
|
0.2
|
1.0
|
CD
|
C:GLU483
|
3.7
|
0.2
|
1.0
|
OD2
|
B:ASP115
|
3.8
|
0.2
|
1.0
|
C
|
C:CYS458
|
4.1
|
0.2
|
1.0
|
OE2
|
C:GLU460
|
4.4
|
0.2
|
1.0
|
CG
|
B:ASN112
|
4.4
|
0.2
|
1.0
|
SG
|
C:CYS458
|
4.4
|
0.2
|
1.0
|
OE1
|
C:GLU483
|
4.5
|
0.2
|
1.0
|
CG
|
B:ASP115
|
4.6
|
0.2
|
1.0
|
CG
|
C:GLU483
|
4.7
|
0.2
|
1.0
|
CA
|
C:GLY459
|
4.8
|
0.2
|
1.0
|
OD1
|
B:ASP115
|
4.8
|
0.2
|
1.0
|
CG
|
C:GLU460
|
4.8
|
0.2
|
1.0
|
N
|
C:GLY459
|
4.9
|
0.2
|
1.0
|
ND2
|
B:ASN433
|
4.9
|
0.2
|
1.0
|
CB
|
B:ASN112
|
5.0
|
0.2
|
1.0
|
|
Thallium binding site 10 out
of 56 in 2ynj
Go back to
Thallium Binding Sites List in 2ynj
Thallium binding site 10 out
of 56 in the Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography
Mono view
Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 10 of Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Tl551
b:0.2
occ:1.00
|
O
|
C:THR30
|
2.3
|
0.2
|
1.0
|
O3G
|
C:AGS549
|
2.8
|
0.2
|
1.0
|
O
|
C:LYS51
|
2.9
|
0.2
|
1.0
|
O1A
|
C:AGS549
|
3.0
|
0.2
|
1.0
|
OG1
|
C:THR30
|
3.3
|
0.2
|
1.0
|
C
|
C:THR30
|
3.3
|
0.2
|
1.0
|
CB
|
C:THR30
|
3.6
|
0.2
|
1.0
|
OG1
|
C:THR90
|
3.6
|
0.2
|
1.0
|
O3A
|
C:AGS549
|
3.8
|
0.2
|
1.0
|
PA
|
C:AGS549
|
4.0
|
0.2
|
1.0
|
C
|
C:LYS51
|
4.0
|
0.2
|
1.0
|
CA
|
C:THR30
|
4.1
|
0.2
|
1.0
|
PG
|
C:AGS549
|
4.1
|
0.2
|
1.0
|
N
|
C:GLY53
|
4.1
|
0.2
|
1.0
|
N
|
C:LEU31
|
4.3
|
0.2
|
1.0
|
CB
|
C:THR90
|
4.5
|
0.2
|
1.0
|
CA
|
C:LEU31
|
4.5
|
0.2
|
1.0
|
O3B
|
C:AGS549
|
4.6
|
0.2
|
1.0
|
CG2
|
C:THR90
|
4.6
|
0.2
|
1.0
|
CB
|
C:LYS51
|
4.7
|
0.2
|
1.0
|
CA
|
C:GLY53
|
4.8
|
0.2
|
1.0
|
O2G
|
C:AGS549
|
4.8
|
0.2
|
1.0
|
CA
|
C:ASP52
|
4.8
|
0.2
|
1.0
|
O2A
|
C:AGS549
|
4.8
|
0.2
|
1.0
|
N
|
C:ASP52
|
4.8
|
0.2
|
1.0
|
CA
|
C:LYS51
|
4.9
|
0.2
|
1.0
|
C
|
C:ASP52
|
4.9
|
0.2
|
1.0
|
CG2
|
C:THR30
|
4.9
|
0.2
|
1.0
|
PB
|
C:AGS549
|
5.0
|
0.2
|
1.0
|
|
Reference:
A.Bartesaghi,
F.Lecumberry,
G.Sapiro,
S.Subramaniam.
Protein Secondary Structure Determination By Constrained Single-Particle Cryo-Electron Tomography Structure V. 20 2003 2012.
ISSN: ISSN 0969-2126
PubMed: 23217682
DOI: 10.1016/J.STR.2012.10.016
Page generated: Fri Oct 11 09:39:31 2024
|