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Thallium in PDB 2ynj: Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography

Other elements in 2ynj:

The structure of Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography also contains other interesting chemical elements:

Magnesium (Mg) 14 atoms

Thallium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 56;

Binding sites:

The binding sites of Thallium atom in the Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography (pdb code 2ynj). This binding sites where shown within 5.0 Angstroms radius around Thallium atom.
In total 56 binding sites of Thallium where determined in the Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography, PDB code: 2ynj:
Jump to Thallium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Thallium binding site 1 out of 56 in 2ynj

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Thallium binding site 1 out of 56 in the Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography


Mono view


Stereo pair view

A full contact list of Thallium with other atoms in the Tl binding site number 1 of Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tl550

b:0.2
occ:1.00
TL H:TL554 0.5 0.2 0.3
OE2 A:GLU483 2.5 0.2 1.0
O A:CYS458 2.9 0.2 1.0
OD1 H:ASN112 3.2 0.2 1.0
CD A:GLU483 3.7 0.2 1.0
OD2 H:ASP115 3.8 0.2 1.0
C A:CYS458 4.1 0.2 1.0
OE2 A:GLU460 4.4 0.2 1.0
CG H:ASN112 4.4 0.2 1.0
SG A:CYS458 4.4 0.2 1.0
OE1 A:GLU483 4.5 0.2 1.0
CG H:ASP115 4.6 0.2 1.0
CG A:GLU483 4.7 0.2 1.0
CA A:GLY459 4.8 0.2 1.0
OD1 H:ASP115 4.8 0.2 1.0
CG A:GLU460 4.8 0.2 1.0
N A:GLY459 4.9 0.2 1.0
ND2 H:ASN433 4.9 0.2 1.0
CB H:ASN112 5.0 0.2 1.0

Thallium binding site 2 out of 56 in 2ynj

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Thallium binding site 2 out of 56 in the Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography


Mono view


Stereo pair view

A full contact list of Thallium with other atoms in the Tl binding site number 2 of Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tl551

b:0.2
occ:1.00
O A:THR30 2.3 0.2 1.0
O3G A:AGS549 2.8 0.2 1.0
O A:LYS51 2.9 0.2 1.0
O1A A:AGS549 3.0 0.2 1.0
OG1 A:THR30 3.3 0.2 1.0
C A:THR30 3.3 0.2 1.0
CB A:THR30 3.6 0.2 1.0
OG1 A:THR90 3.6 0.2 1.0
O3A A:AGS549 3.8 0.2 1.0
PA A:AGS549 4.0 0.2 1.0
C A:LYS51 4.0 0.2 1.0
CA A:THR30 4.1 0.2 1.0
PG A:AGS549 4.1 0.2 1.0
N A:GLY53 4.1 0.2 1.0
N A:LEU31 4.3 0.2 1.0
CB A:THR90 4.5 0.2 1.0
CA A:LEU31 4.5 0.2 1.0
O3B A:AGS549 4.6 0.2 1.0
CG2 A:THR90 4.6 0.2 1.0
CB A:LYS51 4.7 0.2 1.0
CA A:GLY53 4.8 0.2 1.0
O2G A:AGS549 4.8 0.2 1.0
CA A:ASP52 4.8 0.2 1.0
O2A A:AGS549 4.8 0.2 1.0
N A:ASP52 4.8 0.2 1.0
CA A:LYS51 4.9 0.2 1.0
C A:ASP52 4.9 0.2 1.0
CG2 A:THR30 4.9 0.2 1.0
PB A:AGS549 5.0 0.2 1.0

Thallium binding site 3 out of 56 in 2ynj

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Thallium binding site 3 out of 56 in the Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography


Mono view


Stereo pair view

A full contact list of Thallium with other atoms in the Tl binding site number 3 of Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tl552

b:0.2
occ:1.00
O A:SER217 3.0 0.2 1.0
OE1 A:GLN319 3.3 0.2 1.0
CE1 A:PHE219 3.6 0.2 1.0
CD1 A:PHE219 3.6 0.2 1.0
CG A:GLN319 3.6 0.2 1.0
C A:SER217 3.7 0.2 1.0
C A:PRO218 3.7 0.2 1.0
CZ A:PHE219 3.8 0.2 1.0
CG A:PHE219 3.8 0.2 1.0
O A:PRO218 3.8 0.2 1.0
N A:PHE219 3.8 0.2 1.0
CB A:GLN319 3.9 0.2 1.0
CD A:GLN319 3.9 0.2 1.0
CD2 A:PHE219 3.9 0.2 1.0
CE2 A:PHE219 3.9 0.2 1.0
CD A:LYS245 4.0 0.2 1.0
CA A:PHE219 4.1 0.2 1.0
NZ A:LYS245 4.3 0.2 1.0
N A:PRO218 4.3 0.2 1.0
CA A:GLN319 4.4 0.2 1.0
CA A:PRO218 4.4 0.2 1.0
CB A:PHE219 4.6 0.2 1.0
CB A:SER217 4.6 0.2 1.0
CA A:SER217 4.6 0.2 1.0
O A:ALA320 4.6 0.2 1.0
CE A:LYS245 4.8 0.2 1.0
N A:ALA320 4.8 0.2 1.0

Thallium binding site 4 out of 56 in 2ynj

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Thallium binding site 4 out of 56 in the Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography


Mono view


Stereo pair view

A full contact list of Thallium with other atoms in the Tl binding site number 4 of Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tl554

b:0.2
occ:1.00
TL B:TL550 0.5 0.2 1.0
OE2 B:GLU483 2.8 0.2 1.0
OD1 A:ASN112 3.2 0.2 1.0
O B:CYS458 3.3 0.2 1.0
OD2 A:ASP115 3.4 0.2 1.0
CD B:GLU483 4.0 0.2 1.0
CG A:ASN112 4.2 0.2 1.0
OE2 B:GLU460 4.4 0.2 1.0
CG A:ASP115 4.4 0.2 1.0
C B:CYS458 4.5 0.2 1.0
ND2 A:ASN433 4.6 0.2 1.0
OE1 B:GLU483 4.6 0.2 1.0
OD1 A:ASP115 4.7 0.2 1.0
CB A:ASN112 4.7 0.2 1.0
CA B:GLY459 4.9 0.2 1.0
SG B:CYS458 5.0 0.2 1.0

Thallium binding site 5 out of 56 in 2ynj

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Thallium binding site 5 out of 56 in the Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography


Mono view


Stereo pair view

A full contact list of Thallium with other atoms in the Tl binding site number 5 of Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Tl550

b:0.2
occ:1.00
TL A:TL554 0.5 0.2 1.0
OE2 B:GLU483 2.5 0.2 1.0
O B:CYS458 2.9 0.2 1.0
OD1 A:ASN112 3.2 0.2 1.0
CD B:GLU483 3.7 0.2 1.0
OD2 A:ASP115 3.8 0.2 1.0
C B:CYS458 4.1 0.2 1.0
OE2 B:GLU460 4.4 0.2 1.0
CG A:ASN112 4.4 0.2 1.0
SG B:CYS458 4.4 0.2 1.0
OE1 B:GLU483 4.5 0.2 1.0
CG A:ASP115 4.6 0.2 1.0
CG B:GLU483 4.7 0.2 1.0
CA B:GLY459 4.8 0.2 1.0
OD1 A:ASP115 4.8 0.2 1.0
CG B:GLU460 4.8 0.2 1.0
N B:GLY459 4.9 0.2 1.0
ND2 A:ASN433 4.9 0.2 1.0
CB A:ASN112 5.0 0.2 1.0

Thallium binding site 6 out of 56 in 2ynj

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Thallium binding site 6 out of 56 in the Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography


Mono view


Stereo pair view

A full contact list of Thallium with other atoms in the Tl binding site number 6 of Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Tl551

b:0.2
occ:1.00
O B:THR30 2.3 0.2 1.0
O3G B:AGS549 2.8 0.2 1.0
O B:LYS51 2.9 0.2 1.0
O1A B:AGS549 3.0 0.2 1.0
OG1 B:THR30 3.3 0.2 1.0
C B:THR30 3.3 0.2 1.0
CB B:THR30 3.6 0.2 1.0
OG1 B:THR90 3.6 0.2 1.0
O3A B:AGS549 3.8 0.2 1.0
PA B:AGS549 4.0 0.2 1.0
C B:LYS51 4.0 0.2 1.0
CA B:THR30 4.1 0.2 1.0
PG B:AGS549 4.1 0.2 1.0
N B:GLY53 4.1 0.2 1.0
N B:LEU31 4.3 0.2 1.0
CB B:THR90 4.5 0.2 1.0
CA B:LEU31 4.5 0.2 1.0
O3B B:AGS549 4.6 0.2 1.0
CG2 B:THR90 4.6 0.2 1.0
CB B:LYS51 4.7 0.2 1.0
CA B:GLY53 4.8 0.2 1.0
O2G B:AGS549 4.8 0.2 1.0
CA B:ASP52 4.8 0.2 1.0
O2A B:AGS549 4.8 0.2 1.0
N B:ASP52 4.8 0.2 1.0
CA B:LYS51 4.9 0.2 1.0
C B:ASP52 4.9 0.2 1.0
CG2 B:THR30 4.9 0.2 1.0
PB B:AGS549 5.0 0.2 1.0

Thallium binding site 7 out of 56 in 2ynj

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Thallium binding site 7 out of 56 in the Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography


Mono view


Stereo pair view

A full contact list of Thallium with other atoms in the Tl binding site number 7 of Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Tl552

b:0.2
occ:1.00
O B:SER217 3.0 0.2 1.0
OE1 B:GLN319 3.3 0.2 1.0
CE1 B:PHE219 3.6 0.2 1.0
CD1 B:PHE219 3.6 0.2 1.0
CG B:GLN319 3.6 0.2 1.0
C B:SER217 3.7 0.2 1.0
C B:PRO218 3.7 0.2 1.0
CZ B:PHE219 3.8 0.2 1.0
CG B:PHE219 3.8 0.2 1.0
O B:PRO218 3.8 0.2 1.0
N B:PHE219 3.8 0.2 1.0
CB B:GLN319 3.9 0.2 1.0
CD B:GLN319 3.9 0.2 1.0
CD2 B:PHE219 3.9 0.2 1.0
CE2 B:PHE219 3.9 0.2 1.0
CD B:LYS245 4.0 0.2 1.0
CA B:PHE219 4.1 0.2 1.0
NZ B:LYS245 4.3 0.2 1.0
N B:PRO218 4.3 0.2 1.0
CA B:GLN319 4.4 0.2 1.0
CA B:PRO218 4.4 0.2 1.0
CB B:PHE219 4.6 0.2 1.0
CB B:SER217 4.6 0.2 1.0
CA B:SER217 4.6 0.2 1.0
O B:ALA320 4.6 0.2 1.0
CE B:LYS245 4.8 0.2 1.0
N B:ALA320 4.8 0.2 1.0

Thallium binding site 8 out of 56 in 2ynj

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Thallium binding site 8 out of 56 in the Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography


Mono view


Stereo pair view

A full contact list of Thallium with other atoms in the Tl binding site number 8 of Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Tl554

b:0.2
occ:1.00
TL C:TL550 0.5 0.2 1.0
OE2 C:GLU483 2.8 0.2 1.0
OD1 B:ASN112 3.2 0.2 1.0
O C:CYS458 3.3 0.2 1.0
OD2 B:ASP115 3.4 0.2 1.0
CD C:GLU483 4.0 0.2 1.0
CG B:ASN112 4.2 0.2 1.0
OE2 C:GLU460 4.4 0.2 1.0
CG B:ASP115 4.4 0.2 1.0
C C:CYS458 4.5 0.2 1.0
ND2 B:ASN433 4.6 0.2 1.0
OE1 C:GLU483 4.6 0.2 1.0
OD1 B:ASP115 4.7 0.2 1.0
CB B:ASN112 4.7 0.2 1.0
CA C:GLY459 4.9 0.2 1.0
SG C:CYS458 5.0 0.2 1.0

Thallium binding site 9 out of 56 in 2ynj

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Thallium binding site 9 out of 56 in the Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography


Mono view


Stereo pair view

A full contact list of Thallium with other atoms in the Tl binding site number 9 of Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Tl550

b:0.2
occ:1.00
TL B:TL554 0.5 0.2 1.0
OE2 C:GLU483 2.5 0.2 1.0
O C:CYS458 2.9 0.2 1.0
OD1 B:ASN112 3.2 0.2 1.0
CD C:GLU483 3.7 0.2 1.0
OD2 B:ASP115 3.8 0.2 1.0
C C:CYS458 4.1 0.2 1.0
OE2 C:GLU460 4.4 0.2 1.0
CG B:ASN112 4.4 0.2 1.0
SG C:CYS458 4.4 0.2 1.0
OE1 C:GLU483 4.5 0.2 1.0
CG B:ASP115 4.6 0.2 1.0
CG C:GLU483 4.7 0.2 1.0
CA C:GLY459 4.8 0.2 1.0
OD1 B:ASP115 4.8 0.2 1.0
CG C:GLU460 4.8 0.2 1.0
N C:GLY459 4.9 0.2 1.0
ND2 B:ASN433 4.9 0.2 1.0
CB B:ASN112 5.0 0.2 1.0

Thallium binding site 10 out of 56 in 2ynj

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Thallium binding site 10 out of 56 in the Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography


Mono view


Stereo pair view

A full contact list of Thallium with other atoms in the Tl binding site number 10 of Groel at Sub-Nanometer Resolution By Constrained Single Particle Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Tl551

b:0.2
occ:1.00
O C:THR30 2.3 0.2 1.0
O3G C:AGS549 2.8 0.2 1.0
O C:LYS51 2.9 0.2 1.0
O1A C:AGS549 3.0 0.2 1.0
OG1 C:THR30 3.3 0.2 1.0
C C:THR30 3.3 0.2 1.0
CB C:THR30 3.6 0.2 1.0
OG1 C:THR90 3.6 0.2 1.0
O3A C:AGS549 3.8 0.2 1.0
PA C:AGS549 4.0 0.2 1.0
C C:LYS51 4.0 0.2 1.0
CA C:THR30 4.1 0.2 1.0
PG C:AGS549 4.1 0.2 1.0
N C:GLY53 4.1 0.2 1.0
N C:LEU31 4.3 0.2 1.0
CB C:THR90 4.5 0.2 1.0
CA C:LEU31 4.5 0.2 1.0
O3B C:AGS549 4.6 0.2 1.0
CG2 C:THR90 4.6 0.2 1.0
CB C:LYS51 4.7 0.2 1.0
CA C:GLY53 4.8 0.2 1.0
O2G C:AGS549 4.8 0.2 1.0
CA C:ASP52 4.8 0.2 1.0
O2A C:AGS549 4.8 0.2 1.0
N C:ASP52 4.8 0.2 1.0
CA C:LYS51 4.9 0.2 1.0
C C:ASP52 4.9 0.2 1.0
CG2 C:THR30 4.9 0.2 1.0
PB C:AGS549 5.0 0.2 1.0

Reference:

A.Bartesaghi, F.Lecumberry, G.Sapiro, S.Subramaniam. Protein Secondary Structure Determination By Constrained Single-Particle Cryo-Electron Tomography Structure V. 20 2003 2012.
ISSN: ISSN 0969-2126
PubMed: 23217682
DOI: 10.1016/J.STR.2012.10.016
Page generated: Wed Dec 16 02:28:45 2020

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