Atomistry » Thallium » PDB 1f1h-4wfh » 4wfg
Atomistry »
  Thallium »
    PDB 1f1h-4wfh »
      4wfg »

Thallium in PDB 4wfg: Human Traak K+ Channel in A Tl+ Bound Conductive Conformation

Protein crystallography data

The structure of Human Traak K+ Channel in A Tl+ Bound Conductive Conformation, PDB code: 4wfg was solved by S.G.Brohawn, R.Mackinnon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.00 / 3.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 80.798, 138.760, 96.317, 90.00, 94.52, 90.00
R / Rfree (%) 20.2 / 23.6

Other elements in 4wfg:

The structure of Human Traak K+ Channel in A Tl+ Bound Conductive Conformation also contains other interesting chemical elements:

Calcium (Ca) 3 atoms

Thallium Binding Sites:

The binding sites of Thallium atom in the Human Traak K+ Channel in A Tl+ Bound Conductive Conformation (pdb code 4wfg). This binding sites where shown within 5.0 Angstroms radius around Thallium atom.
In total 8 binding sites of Thallium where determined in the Human Traak K+ Channel in A Tl+ Bound Conductive Conformation, PDB code: 4wfg:
Jump to Thallium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Thallium binding site 1 out of 8 in 4wfg

Go back to Thallium Binding Sites List in 4wfg
Thallium binding site 1 out of 8 in the Human Traak K+ Channel in A Tl+ Bound Conductive Conformation


Mono view


Stereo pair view

A full contact list of Thallium with other atoms in the Tl binding site number 1 of Human Traak K+ Channel in A Tl+ Bound Conductive Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tl301

b:0.9
occ:1.00
 OG1 A:THR238 2.4 90.9 1.0
OG1 B:THR238 2.7 83.8 1.0
O A:THR238 2.7 92.3 1.0
OG1 B:THR129 2.8 0.0 1.0
OG1 A:THR129 2.9 88.4 1.0
O B:THR238 2.9 84.6 1.0
O B:THR129 3.0 0.8 1.0
O A:THR129 3.1 0.8 1.0
CB A:THR238 3.3 95.6 1.0
CB B:THR129 3.6 0.5 1.0
TL A:TL307 3.6 0.5 1.0
C A:THR238 3.6 95.0 1.0
CB B:THR238 3.6 87.2 1.0
CB A:THR129 3.7 89.1 1.0
C B:THR129 3.8 0.9 1.0
C B:THR238 3.9 88.3 1.0
C A:THR129 3.9 96.7 1.0
CA A:THR238 4.1 97.3 1.0
CA B:THR129 4.4 0.6 1.0
CA B:THR238 4.4 88.8 1.0
CA A:THR129 4.5 93.8 1.0
CG2 A:THR238 4.5 98.9 1.0
N A:VAL239 4.6 94.1 1.0
O A:THR237 4.6 97.5 1.0
N B:ILE130 4.8 0.3 1.0
N A:ILE130 4.8 96.6 1.0
CG2 B:THR238 4.8 92.5 1.0
CG2 B:THR129 4.8 0.1 1.0
N B:VAL239 4.9 91.4 1.0
CG2 A:THR129 4.9 89.5 1.0
CA A:VAL239 5.0 95.4 1.0

Thallium binding site 2 out of 8 in 4wfg

Go back to Thallium Binding Sites List in 4wfg
Thallium binding site 2 out of 8 in the Human Traak K+ Channel in A Tl+ Bound Conductive Conformation


Mono view


Stereo pair view

A full contact list of Thallium with other atoms in the Tl binding site number 2 of Human Traak K+ Channel in A Tl+ Bound Conductive Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tl302

b:0.3
occ:1.00
 O A:GLY240 2.5 78.8 1.0
O B:GLY240 2.5 78.8 1.0
O A:GLY131 2.7 0.7 1.0
O B:GLY131 2.8 0.7 1.0
O A:VAL239 2.9 89.4 1.0
O B:VAL239 3.0 88.1 1.0
TL A:TL303 3.1 0.2 1.0
O A:ILE130 3.1 95.1 1.0
TL A:TL307 3.2 0.5 1.0
O B:ILE130 3.2 98.5 1.0
C A:GLY240 3.4 85.9 1.0
C B:GLY240 3.4 84.4 1.0
C A:GLY131 3.5 96.2 1.0
C B:GLY131 3.5 99.9 1.0
CA A:GLY240 4.0 89.9 1.0
CA B:GLY240 4.0 88.2 1.0
C A:VAL239 4.0 92.6 1.0
CA A:GLY131 4.1 99.8 1.0
C B:VAL239 4.1 90.3 1.0
CA B:GLY131 4.1 99.7 1.0
C A:ILE130 4.2 97.2 1.0
C B:ILE130 4.3 98.3 1.0
N B:PHE241 4.3 86.0 1.0
N A:PHE241 4.3 88.4 1.0
N A:TYR132 4.4 90.0 1.0
N B:TYR132 4.4 0.4 1.0
N A:GLY240 4.5 93.8 1.0
N B:GLY240 4.6 92.0 1.0
CA B:PHE241 4.6 85.3 1.0
N A:GLY131 4.6 0.4 1.0
CA A:PHE241 4.6 91.5 1.0
O B:PHE241 4.7 82.9 1.0
N B:GLY131 4.7 99.0 1.0
CA A:TYR132 4.7 90.6 1.0
O B:TYR132 4.7 0.5 1.0
CA B:TYR132 4.7 99.7 1.0
O A:TYR132 4.7 0.0 1.0
O A:PHE241 4.8 91.4 1.0
C B:PHE241 4.8 85.7 1.0
C A:TYR132 4.9 95.3 1.0
C A:PHE241 4.9 91.5 1.0
C B:TYR132 4.9 98.0 1.0

Thallium binding site 3 out of 8 in 4wfg

Go back to Thallium Binding Sites List in 4wfg
Thallium binding site 3 out of 8 in the Human Traak K+ Channel in A Tl+ Bound Conductive Conformation


Mono view


Stereo pair view

A full contact list of Thallium with other atoms in the Tl binding site number 3 of Human Traak K+ Channel in A Tl+ Bound Conductive Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tl303

b:0.2
occ:1.00
 O A:PHE241 2.6 91.4 1.0
O B:TYR132 2.6 0.5 1.0
O B:PHE241 2.7 82.9 1.0
O A:TYR132 2.8 0.0 1.0
O A:GLY240 3.1 78.8 1.0
TL A:TL302 3.1 0.3 1.0
O B:GLY131 3.1 0.7 1.0
O B:GLY240 3.2 78.8 1.0
O A:GLY131 3.3 0.7 1.0
C A:PHE241 3.4 91.5 1.0
C B:TYR132 3.5 98.0 1.0
C B:PHE241 3.5 85.7 1.0
C A:TYR132 3.7 95.3 1.0
CA A:PHE241 4.0 91.5 1.0
C A:GLY240 4.2 85.9 1.0
CA B:TYR132 4.2 99.7 1.0
CA B:PHE241 4.2 85.3 1.0
C B:GLY131 4.2 99.9 1.0
C B:GLY240 4.3 84.4 1.0
N B:GLY133 4.3 0.4 1.0
CA A:TYR132 4.4 90.6 1.0
C A:GLY131 4.4 96.2 1.0
N A:GLY242 4.4 93.5 1.0
CA B:GLY133 4.4 0.8 1.0
N B:GLY242 4.5 90.3 1.0
N A:GLY133 4.5 97.6 1.0
N A:PHE241 4.6 88.4 1.0
CA A:GLY133 4.6 98.4 1.0
N B:TYR132 4.7 0.4 1.0
CA B:GLY242 4.7 96.2 1.0
N B:PHE241 4.7 86.0 1.0
CA A:GLY242 4.8 96.6 1.0
N A:TYR132 4.9 90.0 1.0

Thallium binding site 4 out of 8 in 4wfg

Go back to Thallium Binding Sites List in 4wfg
Thallium binding site 4 out of 8 in the Human Traak K+ Channel in A Tl+ Bound Conductive Conformation


Mono view


Stereo pair view

A full contact list of Thallium with other atoms in the Tl binding site number 4 of Human Traak K+ Channel in A Tl+ Bound Conductive Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tl304

b:0.5
occ:1.00
 O A:TRP223 2.7 0.3 1.0
O A:CYS218 3.1 0.8 1.0
OD1 A:ASP222 3.5 0.4 1.0
SG A:CYS218 3.6 0.9 1.0
C A:TRP223 3.6 1.0 1.0
C A:CYS218 3.8 0.1 1.0
CA A:ASP222 3.9 0.2 1.0
C A:ASP222 3.9 0.3 1.0
N A:TRP223 4.0 0.8 1.0
CA A:CYS218 4.3 0.9 1.0
N A:SER224 4.5 0.4 1.0
CA A:TRP223 4.5 1.0 1.0
CB A:CYS218 4.5 0.7 1.0
CG A:ASP222 4.5 0.7 1.0
O A:ASP222 4.5 0.9 1.0
CA A:SER224 4.6 0.4 1.0
N A:TYR219 4.8 0.1 1.0
N A:ASP222 4.8 0.0 1.0
CB A:ASP222 4.9 0.4 1.0

Thallium binding site 5 out of 8 in 4wfg

Go back to Thallium Binding Sites List in 4wfg
Thallium binding site 5 out of 8 in the Human Traak K+ Channel in A Tl+ Bound Conductive Conformation


Mono view


Stereo pair view

A full contact list of Thallium with other atoms in the Tl binding site number 5 of Human Traak K+ Channel in A Tl+ Bound Conductive Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Tl307

b:0.5
occ:1.00
 O B:ILE130 2.7 98.5 1.0
O A:VAL239 2.7 89.4 1.0
O A:ILE130 2.7 95.1 1.0
O B:VAL239 2.7 88.1 1.0
O A:THR238 2.8 92.3 1.0
O B:THR238 2.9 84.6 1.0
O B:THR129 3.0 0.8 1.0
O A:THR129 3.0 0.8 1.0
TL A:TL302 3.2 0.3 1.0
C A:VAL239 3.4 92.6 1.0
C B:VAL239 3.4 90.3 1.0
C B:ILE130 3.5 98.3 1.0
C A:ILE130 3.5 97.2 1.0
TL A:TL301 3.6 0.9 1.0
C A:THR238 3.9 95.0 1.0
CA A:VAL239 3.9 95.4 1.0
C B:THR238 4.0 88.3 1.0
CA B:VAL239 4.1 91.0 1.0
C B:THR129 4.1 0.9 1.0
CA A:ILE130 4.1 95.7 1.0
CA B:ILE130 4.1 99.3 1.0
C A:THR129 4.1 96.7 1.0
N A:GLY240 4.3 93.8 1.0
N B:GLY240 4.3 92.0 1.0
N A:VAL239 4.4 94.1 1.0
N B:GLY131 4.4 99.0 1.0
N A:GLY131 4.5 0.4 1.0
N B:VAL239 4.5 91.4 1.0
CA A:GLY240 4.6 89.9 1.0
N B:ILE130 4.6 0.3 1.0
N A:ILE130 4.6 96.6 1.0
CA B:GLY240 4.6 88.2 1.0
CA B:GLY131 4.7 99.7 1.0
O B:GLY240 4.7 78.8 1.0
O A:GLY240 4.7 78.8 1.0
CA A:GLY131 4.7 99.8 1.0
O B:GLY131 4.9 0.7 1.0
C B:GLY240 4.9 84.4 1.0
C A:GLY240 4.9 85.9 1.0
O A:GLY131 5.0 0.7 1.0

Thallium binding site 6 out of 8 in 4wfg

Go back to Thallium Binding Sites List in 4wfg
Thallium binding site 6 out of 8 in the Human Traak K+ Channel in A Tl+ Bound Conductive Conformation


Mono view


Stereo pair view

A full contact list of Thallium with other atoms in the Tl binding site number 6 of Human Traak K+ Channel in A Tl+ Bound Conductive Conformation within 5.0Å range:

Thallium binding site 7 out of 8 in 4wfg

Go back to Thallium Binding Sites List in 4wfg
Thallium binding site 7 out of 8 in the Human Traak K+ Channel in A Tl+ Bound Conductive Conformation


Mono view


Stereo pair view

A full contact list of Thallium with other atoms in the Tl binding site number 7 of Human Traak K+ Channel in A Tl+ Bound Conductive Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Tl302

b:0.5
occ:1.00
 O B:GLY133 4.4 1.0 1.0
CA B:ASN134 4.8 0.2 1.0

Thallium binding site 8 out of 8 in 4wfg

Go back to Thallium Binding Sites List in 4wfg
Thallium binding site 8 out of 8 in the Human Traak K+ Channel in A Tl+ Bound Conductive Conformation


Mono view


Stereo pair view

A full contact list of Thallium with other atoms in the Tl binding site number 8 of Human Traak K+ Channel in A Tl+ Bound Conductive Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Tl303

b:0.5
occ:1.00
 O B:TRP223 2.7 0.4 1.0
SG B:CYS218 3.2 0.3 1.0
O B:CYS218 3.3 0.7 1.0
C B:TRP223 3.7 1.0 1.0
C B:CYS218 3.8 0.9 1.0
CA B:CYS218 4.2 0.5 1.0
CB B:CYS218 4.3 0.5 1.0
OD1 B:ASP222 4.3 0.2 1.0
N B:TRP223 4.4 0.5 1.0
CA B:SER224 4.4 0.1 1.0
N B:SER224 4.4 0.4 1.0
C B:ASP222 4.5 0.0 1.0
CA B:ASP222 4.6 0.9 1.0
CA B:TRP223 4.7 0.0 1.0
N B:TYR219 4.8 0.8 1.0
C B:SER224 5.0 0.5 1.0

Reference:

S.G.Brohawn, E.B.Campbell, R.Mackinnon. Physical Mechanism For Gating and Mechanosensitivity of the Human Traak K+ Channel Nature 2014.
ISSN: ESSN 1476-4687
Page generated: Fri Oct 11 10:06:47 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy