Thallium in PDB 8ctv: Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Tl+ Complex
Protein crystallography data
The structure of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Tl+ Complex, PDB code: 8ctv
was solved by
B.Lee,
K.I.White,
M.A.Socolich,
M.A.Klureza,
R.Henning,
V.Srajer,
R.Ranganathan,
D.Hekstra,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.88 /
2.10
|
Space group
|
I 4
|
Cell size a, b, c (Å), α, β, γ (°)
|
69.123,
69.123,
91.847,
90,
90,
90
|
R / Rfree (%)
|
16.8 /
18.1
|
Other elements in 8ctv:
The structure of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Tl+ Complex also contains other interesting chemical elements:
Thallium Binding Sites:
The binding sites of Thallium atom in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Tl+ Complex
(pdb code 8ctv). This binding sites where shown within
5.0 Angstroms radius around Thallium atom.
In total 8 binding sites of Thallium where determined in the
Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Tl+ Complex, PDB code: 8ctv:
Jump to Thallium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Thallium binding site 1 out
of 8 in 8ctv
Go back to
Thallium Binding Sites List in 8ctv
Thallium binding site 1 out
of 8 in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Tl+ Complex
 Mono view
 Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 1 of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Tl+ Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Tl204
b:13.5
occ:0.25
|
O
|
A:TYR66
|
2.8
|
9.6
|
1.0
|
O
|
A:GLY65
|
3.3
|
9.7
|
1.0
|
C
|
A:TYR66
|
3.5
|
9.6
|
1.0
|
TL
|
A:TL205
|
3.5
|
10.9
|
0.2
|
HA
|
A:TYR66
|
3.7
|
15.1
|
1.0
|
HA3
|
A:GLY67
|
3.9
|
7.5
|
1.0
|
CA
|
A:TYR66
|
4.1
|
9.9
|
1.0
|
N
|
A:GLY67
|
4.3
|
9.4
|
1.0
|
C
|
A:GLY65
|
4.4
|
9.8
|
1.0
|
CA
|
A:GLY67
|
4.6
|
9.4
|
1.0
|
N
|
A:TYR66
|
4.8
|
9.9
|
1.0
|
H
|
A:GLY67
|
5.0
|
13.0
|
1.0
|
|
Thallium binding site 2 out
of 8 in 8ctv
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Thallium Binding Sites List in 8ctv
Thallium binding site 2 out
of 8 in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Tl+ Complex
 Mono view
 Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 2 of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Tl+ Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Tl205
b:10.9
occ:0.25
|
O
|
A:GLY65
|
2.8
|
9.7
|
1.0
|
O
|
A:VAL64
|
3.0
|
10.7
|
1.0
|
TL
|
A:TL206
|
3.2
|
17.2
|
0.2
|
TL
|
A:TL204
|
3.5
|
13.5
|
0.2
|
C
|
A:GLY65
|
3.6
|
9.8
|
1.0
|
HA3
|
A:GLY65
|
3.7
|
14.2
|
1.0
|
CA
|
A:GLY65
|
4.1
|
10.0
|
1.0
|
C
|
A:VAL64
|
4.1
|
10.8
|
1.0
|
HA
|
A:TYR66
|
4.2
|
15.1
|
1.0
|
N
|
A:TYR66
|
4.5
|
9.9
|
1.0
|
N
|
A:GLY65
|
4.6
|
10.4
|
1.0
|
CA
|
A:TYR66
|
4.8
|
9.9
|
1.0
|
HA2
|
A:GLY65
|
4.9
|
14.2
|
1.0
|
|
Thallium binding site 3 out
of 8 in 8ctv
Go back to
Thallium Binding Sites List in 8ctv
Thallium binding site 3 out
of 8 in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Tl+ Complex
 Mono view
 Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 3 of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Tl+ Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Tl206
b:17.2
occ:0.23
|
O
|
A:THR63
|
2.7
|
11.8
|
1.0
|
O
|
A:VAL64
|
3.1
|
10.7
|
1.0
|
TL
|
A:TL205
|
3.2
|
10.9
|
0.2
|
TL
|
A:TL207
|
3.6
|
19.9
|
0.2
|
HA
|
A:VAL64
|
3.7
|
10.8
|
1.0
|
C
|
A:VAL64
|
3.7
|
10.8
|
1.0
|
C
|
A:THR63
|
3.8
|
12.2
|
1.0
|
CA
|
A:VAL64
|
4.1
|
11.4
|
1.0
|
HA3
|
A:GLY65
|
4.4
|
14.2
|
1.0
|
HB
|
A:THR63
|
4.5
|
15.2
|
1.0
|
N
|
A:VAL64
|
4.5
|
12.1
|
1.0
|
N
|
A:GLY65
|
4.7
|
10.4
|
1.0
|
CA
|
A:GLY65
|
5.0
|
10.0
|
1.0
|
CA
|
A:THR63
|
5.0
|
13.5
|
1.0
|
|
Thallium binding site 4 out
of 8 in 8ctv
Go back to
Thallium Binding Sites List in 8ctv
Thallium binding site 4 out
of 8 in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Tl+ Complex
 Mono view
 Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 4 of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Tl+ Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Tl207
b:19.9
occ:0.23
|
OG1
|
A:THR63
|
2.8
|
15.0
|
1.0
|
O
|
A:HOH319
|
3.1
|
40.5
|
0.2
|
HB
|
A:THR63
|
3.1
|
15.2
|
1.0
|
O
|
A:THR63
|
3.2
|
11.8
|
1.0
|
CB
|
A:THR63
|
3.5
|
14.1
|
1.0
|
TL
|
A:TL206
|
3.6
|
17.2
|
0.2
|
C
|
A:THR63
|
4.0
|
12.2
|
1.0
|
CA
|
A:THR63
|
4.4
|
13.5
|
1.0
|
HG23
|
A:THR63
|
4.5
|
18.9
|
1.0
|
CG2
|
A:THR63
|
4.7
|
17.2
|
1.0
|
HA
|
A:VAL64
|
4.8
|
10.8
|
1.0
|
HA
|
A:THR63
|
5.0
|
16.0
|
1.0
|
O
|
A:THR62
|
5.0
|
20.8
|
1.0
|
|
Thallium binding site 5 out
of 8 in 8ctv
Go back to
Thallium Binding Sites List in 8ctv
Thallium binding site 5 out
of 8 in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Tl+ Complex
 Mono view
 Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 5 of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Tl+ Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Tl205
b:38.7
occ:0.25
|
O
|
B:TYR66
|
2.6
|
34.4
|
1.0
|
O
|
B:GLY65
|
3.3
|
28.3
|
1.0
|
C
|
B:TYR66
|
3.5
|
33.4
|
1.0
|
TL
|
B:TL206
|
3.5
|
29.3
|
0.2
|
HA3
|
B:GLY67
|
3.8
|
44.6
|
1.0
|
HA
|
B:TYR66
|
3.9
|
41.5
|
1.0
|
CA
|
B:TYR66
|
4.2
|
31.3
|
1.0
|
N
|
B:GLY67
|
4.3
|
34.1
|
1.0
|
C
|
B:GLY65
|
4.4
|
27.7
|
1.0
|
CA
|
B:GLY67
|
4.5
|
36.5
|
1.0
|
N
|
B:TYR66
|
4.8
|
28.9
|
1.0
|
|
Thallium binding site 6 out
of 8 in 8ctv
Go back to
Thallium Binding Sites List in 8ctv
Thallium binding site 6 out
of 8 in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Tl+ Complex
 Mono view
 Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 6 of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Tl+ Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Tl206
b:29.3
occ:0.25
|
O
|
B:GLY65
|
2.8
|
28.3
|
1.0
|
O
|
B:VAL64
|
3.1
|
22.5
|
1.0
|
TL
|
B:TL207
|
3.2
|
23.0
|
0.2
|
C
|
B:GLY65
|
3.5
|
27.7
|
1.0
|
TL
|
B:TL205
|
3.5
|
38.7
|
0.2
|
HA3
|
B:GLY65
|
3.6
|
23.3
|
1.0
|
CA
|
B:GLY65
|
4.0
|
25.6
|
1.0
|
C
|
B:VAL64
|
4.1
|
22.1
|
1.0
|
HA
|
B:TYR66
|
4.3
|
41.5
|
1.0
|
N
|
B:TYR66
|
4.5
|
28.9
|
1.0
|
N
|
B:GLY65
|
4.6
|
23.7
|
1.0
|
CA
|
B:TYR66
|
4.8
|
31.3
|
1.0
|
HA2
|
B:GLY65
|
4.9
|
23.3
|
1.0
|
O
|
B:TYR66
|
5.0
|
34.4
|
1.0
|
|
Thallium binding site 7 out
of 8 in 8ctv
Go back to
Thallium Binding Sites List in 8ctv
Thallium binding site 7 out
of 8 in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Tl+ Complex
 Mono view
 Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 7 of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Tl+ Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Tl207
b:23.0
occ:0.25
|
O
|
B:THR63
|
2.8
|
17.1
|
1.0
|
O
|
B:VAL64
|
3.1
|
22.5
|
1.0
|
TL
|
B:TL206
|
3.2
|
29.3
|
0.2
|
TL
|
B:TL208
|
3.6
|
21.1
|
0.2
|
C
|
B:VAL64
|
3.7
|
22.1
|
1.0
|
HA
|
B:VAL64
|
3.7
|
18.4
|
1.0
|
C
|
B:THR63
|
3.9
|
17.4
|
1.0
|
CA
|
B:VAL64
|
4.2
|
20.0
|
1.0
|
HA3
|
B:GLY65
|
4.3
|
23.3
|
1.0
|
HB
|
B:THR63
|
4.5
|
17.5
|
1.0
|
N
|
B:VAL64
|
4.5
|
18.7
|
1.0
|
N
|
B:GLY65
|
4.6
|
23.7
|
1.0
|
CA
|
B:GLY65
|
4.8
|
25.6
|
1.0
|
|
Thallium binding site 8 out
of 8 in 8ctv
Go back to
Thallium Binding Sites List in 8ctv
Thallium binding site 8 out
of 8 in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Tl+ Complex
 Mono view
 Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 8 of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Tl+ Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Tl208
b:21.1
occ:0.25
|
OG1
|
B:THR63
|
3.0
|
12.1
|
1.0
|
HB
|
B:THR63
|
3.0
|
17.5
|
1.0
|
O
|
B:THR63
|
3.2
|
17.1
|
1.0
|
CB
|
B:THR63
|
3.5
|
13.8
|
1.0
|
TL
|
B:TL207
|
3.6
|
23.0
|
0.2
|
C
|
B:THR63
|
4.0
|
17.4
|
1.0
|
CA
|
B:THR63
|
4.4
|
16.3
|
1.0
|
HG21
|
B:THR63
|
4.5
|
23.6
|
1.0
|
CG2
|
B:THR63
|
4.7
|
12.9
|
1.0
|
NA
|
B:NA209
|
4.7
|
32.2
|
0.2
|
HA
|
B:VAL64
|
4.7
|
18.4
|
1.0
|
HA
|
B:THR63
|
4.9
|
16.7
|
1.0
|
|
Reference:
B.Lee,
K.I.White,
M.A.Socolich,
M.A.Klureza,
R.Henning,
V.Srajer,
R.Ranganathan,
D.Hekstra.
Direct Visualization of Electric Field-Stimulated Ion Conduction in A Potassium Channel To Be Published.
Page generated: Fri Oct 11 10:26:18 2024
|