Thallium in PDB 8ctw: Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Na+,Tl+ Complex
Protein crystallography data
The structure of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Na+,Tl+ Complex, PDB code: 8ctw
was solved by
B.Lee,
K.I.White,
M.A.Socolich,
M.A.Klureza,
R.Henning,
V.Srajer,
R.Ranganathan,
D.Hekstra,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.01 /
2.00
|
Space group
|
I 4
|
Cell size a, b, c (Å), α, β, γ (°)
|
67.9,
67.9,
89.384,
90,
90,
90
|
R / Rfree (%)
|
18 /
19.8
|
Other elements in 8ctw:
The structure of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Na+,Tl+ Complex also contains other interesting chemical elements:
Thallium Binding Sites:
The binding sites of Thallium atom in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Na+,Tl+ Complex
(pdb code 8ctw). This binding sites where shown within
5.0 Angstroms radius around Thallium atom.
In total 8 binding sites of Thallium where determined in the
Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Na+,Tl+ Complex, PDB code: 8ctw:
Jump to Thallium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Thallium binding site 1 out
of 8 in 8ctw
Go back to
Thallium Binding Sites List in 8ctw
Thallium binding site 1 out
of 8 in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Na+,Tl+ Complex
 Mono view
 Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 1 of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Na+,Tl+ Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Tl208
b:14.3
occ:0.17
|
O
|
A:TYR66
|
2.7
|
12.6
|
1.0
|
O
|
A:HOH321
|
3.1
|
38.6
|
0.2
|
O
|
A:GLY65
|
3.4
|
12.3
|
1.0
|
C
|
A:TYR66
|
3.5
|
16.1
|
1.0
|
TL
|
A:TL209
|
3.6
|
11.1
|
0.1
|
HA
|
A:TYR66
|
3.7
|
18.4
|
1.0
|
HA3
|
A:GLY67
|
3.9
|
19.0
|
1.0
|
CA
|
A:TYR66
|
4.1
|
13.5
|
1.0
|
N
|
A:GLY67
|
4.3
|
12.4
|
1.0
|
C
|
A:GLY65
|
4.4
|
12.1
|
1.0
|
CA
|
A:GLY67
|
4.6
|
14.0
|
1.0
|
N
|
A:TYR66
|
4.8
|
11.8
|
1.0
|
H
|
A:GLY67
|
4.9
|
14.3
|
1.0
|
|
Thallium binding site 2 out
of 8 in 8ctw
Go back to
Thallium Binding Sites List in 8ctw
Thallium binding site 2 out
of 8 in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Na+,Tl+ Complex
 Mono view
 Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 2 of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Na+,Tl+ Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Tl209
b:11.1
occ:0.09
|
O
|
A:GLY65
|
2.7
|
12.3
|
1.0
|
O
|
A:VAL64
|
3.0
|
12.1
|
1.0
|
TL
|
A:TL210
|
3.3
|
13.6
|
0.1
|
C
|
A:GLY65
|
3.5
|
12.1
|
1.0
|
TL
|
A:TL208
|
3.6
|
14.3
|
0.2
|
HA3
|
A:GLY65
|
3.6
|
14.4
|
1.0
|
CA
|
A:GLY65
|
4.0
|
12.2
|
1.0
|
C
|
A:VAL64
|
4.1
|
12.7
|
1.0
|
HA
|
A:TYR66
|
4.2
|
18.4
|
1.0
|
N
|
A:TYR66
|
4.4
|
11.8
|
1.0
|
N
|
A:GLY65
|
4.5
|
12.1
|
1.0
|
CA
|
A:TYR66
|
4.7
|
13.5
|
1.0
|
HA2
|
A:GLY65
|
4.9
|
14.4
|
1.0
|
|
Thallium binding site 3 out
of 8 in 8ctw
Go back to
Thallium Binding Sites List in 8ctw
Thallium binding site 3 out
of 8 in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Na+,Tl+ Complex
 Mono view
 Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 3 of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Na+,Tl+ Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Tl210
b:13.6
occ:0.07
|
O
|
A:THR63
|
2.7
|
16.3
|
1.0
|
O
|
A:VAL64
|
2.9
|
12.1
|
1.0
|
TL
|
A:TL209
|
3.3
|
11.1
|
0.1
|
C
|
A:VAL64
|
3.6
|
12.7
|
1.0
|
TL
|
A:TL211
|
3.6
|
13.2
|
0.1
|
HA
|
A:VAL64
|
3.6
|
19.2
|
1.0
|
C
|
A:THR63
|
3.9
|
15.9
|
1.0
|
CA
|
A:VAL64
|
4.1
|
15.6
|
1.0
|
HA3
|
A:GLY65
|
4.3
|
14.4
|
1.0
|
N
|
A:VAL64
|
4.5
|
15.3
|
1.0
|
HB
|
A:THR63
|
4.5
|
13.4
|
1.0
|
N
|
A:GLY65
|
4.5
|
12.1
|
1.0
|
CA
|
A:GLY65
|
4.8
|
12.2
|
1.0
|
|
Thallium binding site 4 out
of 8 in 8ctw
Go back to
Thallium Binding Sites List in 8ctw
Thallium binding site 4 out
of 8 in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Na+,Tl+ Complex
 Mono view
 Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 4 of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Na+,Tl+ Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Tl211
b:13.2
occ:0.10
|
OG1
|
A:THR63
|
2.9
|
18.6
|
1.0
|
HB
|
A:THR63
|
3.0
|
13.4
|
1.0
|
O
|
A:THR63
|
3.1
|
16.3
|
1.0
|
CB
|
A:THR63
|
3.4
|
16.4
|
1.0
|
TL
|
A:TL210
|
3.6
|
13.6
|
0.1
|
C
|
A:THR63
|
3.9
|
15.9
|
1.0
|
CA
|
A:THR63
|
4.3
|
14.7
|
1.0
|
HG23
|
A:THR63
|
4.5
|
15.4
|
1.0
|
CG2
|
A:THR63
|
4.6
|
17.7
|
1.0
|
HA
|
A:VAL64
|
4.7
|
19.2
|
1.0
|
HA
|
A:THR63
|
4.9
|
10.7
|
1.0
|
N
|
A:VAL64
|
4.9
|
15.3
|
1.0
|
O
|
A:THR62
|
5.0
|
19.1
|
1.0
|
|
Thallium binding site 5 out
of 8 in 8ctw
Go back to
Thallium Binding Sites List in 8ctw
Thallium binding site 5 out
of 8 in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Na+,Tl+ Complex
 Mono view
 Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 5 of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Na+,Tl+ Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Tl210
b:30.1
occ:0.17
|
O
|
B:TYR66
|
2.6
|
36.6
|
1.0
|
O
|
B:GLY65
|
3.2
|
29.7
|
1.0
|
O
|
B:HOH316
|
3.2
|
38.1
|
0.2
|
C
|
B:TYR66
|
3.4
|
32.8
|
1.0
|
TL
|
B:TL211
|
3.5
|
21.7
|
0.1
|
HA3
|
B:GLY67
|
3.8
|
51.1
|
1.0
|
HA
|
B:TYR66
|
3.8
|
37.5
|
1.0
|
CA
|
B:TYR66
|
4.2
|
31.8
|
1.0
|
N
|
B:GLY67
|
4.2
|
33.7
|
1.0
|
C
|
B:GLY65
|
4.3
|
29.1
|
1.0
|
CA
|
B:GLY67
|
4.5
|
39.2
|
1.0
|
N
|
B:TYR66
|
4.8
|
29.1
|
1.0
|
O
|
B:HOH315
|
4.9
|
38.1
|
1.0
|
H
|
B:GLY67
|
4.9
|
36.5
|
1.0
|
|
Thallium binding site 6 out
of 8 in 8ctw
Go back to
Thallium Binding Sites List in 8ctw
Thallium binding site 6 out
of 8 in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Na+,Tl+ Complex
 Mono view
 Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 6 of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Na+,Tl+ Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Tl211
b:21.7
occ:0.09
|
O
|
B:GLY65
|
2.6
|
29.7
|
1.0
|
O
|
B:VAL64
|
2.9
|
23.0
|
1.0
|
TL
|
B:TL212
|
3.3
|
19.4
|
0.1
|
C
|
B:GLY65
|
3.4
|
29.1
|
1.0
|
HA3
|
B:GLY65
|
3.4
|
24.6
|
1.0
|
TL
|
B:TL210
|
3.5
|
30.1
|
0.2
|
CA
|
B:GLY65
|
3.9
|
25.8
|
1.0
|
C
|
B:VAL64
|
4.0
|
21.4
|
1.0
|
HA
|
B:TYR66
|
4.3
|
37.5
|
1.0
|
N
|
B:TYR66
|
4.4
|
29.1
|
1.0
|
N
|
B:GLY65
|
4.4
|
24.7
|
1.0
|
CA
|
B:TYR66
|
4.7
|
31.8
|
1.0
|
HA2
|
B:GLY65
|
4.7
|
24.6
|
1.0
|
O
|
B:TYR66
|
4.9
|
36.6
|
1.0
|
C
|
B:TYR66
|
5.0
|
32.8
|
1.0
|
|
Thallium binding site 7 out
of 8 in 8ctw
Go back to
Thallium Binding Sites List in 8ctw
Thallium binding site 7 out
of 8 in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Na+,Tl+ Complex
 Mono view
 Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 7 of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Na+,Tl+ Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Tl212
b:19.4
occ:0.07
|
O
|
B:THR63
|
2.7
|
21.6
|
1.0
|
O
|
B:VAL64
|
2.9
|
23.0
|
1.0
|
TL
|
B:TL211
|
3.3
|
21.7
|
0.1
|
C
|
B:VAL64
|
3.5
|
21.4
|
1.0
|
TL
|
B:TL213
|
3.5
|
20.1
|
0.1
|
HA
|
B:VAL64
|
3.6
|
19.8
|
1.0
|
C
|
B:THR63
|
3.8
|
21.2
|
1.0
|
CA
|
B:VAL64
|
4.0
|
20.5
|
1.0
|
HA3
|
B:GLY65
|
4.2
|
24.6
|
1.0
|
N
|
B:VAL64
|
4.4
|
22.4
|
1.0
|
N
|
B:GLY65
|
4.5
|
24.7
|
1.0
|
HB
|
B:THR63
|
4.6
|
24.4
|
1.0
|
CA
|
B:GLY65
|
4.8
|
25.8
|
1.0
|
|
Thallium binding site 8 out
of 8 in 8ctw
Go back to
Thallium Binding Sites List in 8ctw
Thallium binding site 8 out
of 8 in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Na+,Tl+ Complex
 Mono view
 Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 8 of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -Na+,Tl+ Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Tl213
b:20.1
occ:0.12
|
OG1
|
B:THR63
|
2.8
|
17.2
|
1.0
|
O
|
B:THR63
|
3.0
|
21.6
|
1.0
|
HB
|
B:THR63
|
3.2
|
24.4
|
1.0
|
CB
|
B:THR63
|
3.5
|
19.5
|
1.0
|
TL
|
B:TL212
|
3.5
|
19.4
|
0.1
|
C
|
B:THR63
|
3.9
|
21.2
|
1.0
|
CA
|
B:THR63
|
4.4
|
20.3
|
1.0
|
HA
|
B:VAL64
|
4.6
|
19.8
|
1.0
|
HG21
|
B:THR63
|
4.6
|
32.3
|
1.0
|
CG2
|
B:THR63
|
4.7
|
21.1
|
1.0
|
N
|
B:VAL64
|
4.9
|
22.4
|
1.0
|
HA
|
B:THR63
|
4.9
|
23.9
|
1.0
|
|
Reference:
B.Lee,
K.I.White,
M.A.Socolich,
M.A.Klureza,
R.Henning,
V.Srajer,
R.Ranganathan,
D.Hekstra.
Direct Visualization of Electric Field-Stimulated Ion Conduction in A Potassium Channel To Be Published.
Page generated: Fri Oct 11 10:26:18 2024
|