Thallium in PDB 8ctx: Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -K+,Tl+ Complex
Protein crystallography data
The structure of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -K+,Tl+ Complex, PDB code: 8ctx
was solved by
B.Lee,
K.I.White,
M.A.Socolich,
M.A.Klureza,
R.Henning,
V.Srajer,
R.Ranganathan,
D.Hekstra,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
34.23 /
1.99
|
Space group
|
I 4
|
Cell size a, b, c (Å), α, β, γ (°)
|
68.461,
68.461,
90.389,
90,
90,
90
|
R / Rfree (%)
|
21.4 /
25.4
|
Other elements in 8ctx:
The structure of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -K+,Tl+ Complex also contains other interesting chemical elements:
Thallium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
11;
Binding sites:
The binding sites of Thallium atom in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -K+,Tl+ Complex
(pdb code 8ctx). This binding sites where shown within
5.0 Angstroms radius around Thallium atom.
In total 11 binding sites of Thallium where determined in the
Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -K+,Tl+ Complex, PDB code: 8ctx:
Jump to Thallium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Thallium binding site 1 out
of 11 in 8ctx
Go back to
Thallium Binding Sites List in 8ctx
Thallium binding site 1 out
of 11 in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -K+,Tl+ Complex
Mono view
Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 1 of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -K+,Tl+ Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Tl201
b:38.5
occ:0.11
|
O
|
A:TYR66
|
2.7
|
31.1
|
1.0
|
O
|
A:GLY65
|
3.3
|
33.5
|
1.0
|
C
|
A:TYR66
|
3.4
|
46.5
|
1.0
|
HA
|
A:TYR66
|
3.6
|
46.5
|
1.0
|
K
|
A:K207
|
3.7
|
76.6
|
0.2
|
TL
|
A:TL202
|
3.7
|
34.6
|
0.1
|
HA3
|
A:GLY67
|
3.9
|
47.5
|
1.0
|
CA
|
A:TYR66
|
4.1
|
38.7
|
1.0
|
N
|
A:GLY67
|
4.2
|
35.6
|
1.0
|
C
|
A:GLY65
|
4.4
|
42.2
|
1.0
|
CA
|
A:GLY67
|
4.6
|
39.5
|
1.0
|
N
|
A:TYR66
|
4.8
|
38.7
|
1.0
|
TL
|
A:TL206
|
4.8
|
65.0
|
0.2
|
H
|
A:GLY67
|
4.9
|
42.8
|
1.0
|
|
Thallium binding site 2 out
of 11 in 8ctx
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Thallium Binding Sites List in 8ctx
Thallium binding site 2 out
of 11 in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -K+,Tl+ Complex
Mono view
Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 2 of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -K+,Tl+ Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Tl202
b:34.6
occ:0.05
|
O
|
A:GLY65
|
2.7
|
33.5
|
1.0
|
O
|
A:VAL64
|
2.8
|
34.5
|
1.0
|
TL
|
A:TL203
|
3.2
|
32.2
|
0.1
|
HA3
|
A:GLY65
|
3.5
|
39.6
|
1.0
|
C
|
A:GLY65
|
3.5
|
42.2
|
1.0
|
TL
|
A:TL201
|
3.7
|
38.5
|
0.1
|
C
|
A:VAL64
|
3.9
|
33.3
|
1.0
|
CA
|
A:GLY65
|
3.9
|
33.0
|
1.0
|
HA
|
A:TYR66
|
4.2
|
46.5
|
1.0
|
N
|
A:GLY65
|
4.4
|
31.2
|
1.0
|
N
|
A:TYR66
|
4.5
|
38.7
|
1.0
|
CA
|
A:TYR66
|
4.8
|
38.7
|
1.0
|
HA2
|
A:GLY65
|
4.8
|
39.6
|
1.0
|
|
Thallium binding site 3 out
of 11 in 8ctx
Go back to
Thallium Binding Sites List in 8ctx
Thallium binding site 3 out
of 11 in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -K+,Tl+ Complex
Mono view
Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 3 of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -K+,Tl+ Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Tl203
b:32.2
occ:0.05
|
O
|
A:THR63
|
2.6
|
32.7
|
1.0
|
O
|
A:VAL64
|
2.7
|
34.5
|
1.0
|
TL
|
A:TL202
|
3.2
|
34.6
|
0.1
|
TL
|
A:TL204
|
3.2
|
32.3
|
0.1
|
C
|
A:VAL64
|
3.5
|
33.3
|
1.0
|
HA
|
A:VAL64
|
3.6
|
32.4
|
1.0
|
C
|
A:THR63
|
3.8
|
31.5
|
1.0
|
CA
|
A:VAL64
|
4.0
|
26.9
|
1.0
|
HA3
|
A:GLY65
|
4.3
|
39.6
|
1.0
|
N
|
A:VAL64
|
4.4
|
34.1
|
1.0
|
HB
|
A:THR63
|
4.5
|
40.5
|
1.0
|
N
|
A:GLY65
|
4.5
|
31.2
|
1.0
|
CA
|
A:GLY65
|
4.8
|
33.0
|
1.0
|
CA
|
A:THR63
|
4.9
|
29.8
|
1.0
|
HA
|
A:THR63
|
5.0
|
35.8
|
1.0
|
|
Thallium binding site 4 out
of 11 in 8ctx
Go back to
Thallium Binding Sites List in 8ctx
Thallium binding site 4 out
of 11 in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -K+,Tl+ Complex
Mono view
Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 4 of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -K+,Tl+ Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Tl204
b:32.3
occ:0.05
|
O
|
A:THR63
|
2.7
|
32.7
|
1.0
|
OG1
|
A:THR63
|
2.9
|
33.9
|
1.0
|
HB
|
A:THR63
|
3.0
|
40.5
|
1.0
|
TL
|
A:TL203
|
3.2
|
32.2
|
0.1
|
CB
|
A:THR63
|
3.4
|
33.7
|
1.0
|
C
|
A:THR63
|
3.7
|
31.5
|
1.0
|
CA
|
A:THR63
|
4.2
|
29.8
|
1.0
|
HA
|
A:VAL64
|
4.5
|
32.4
|
1.0
|
HG23
|
A:THR63
|
4.7
|
41.8
|
1.0
|
N
|
A:VAL64
|
4.7
|
34.1
|
1.0
|
HA
|
A:THR63
|
4.7
|
35.8
|
1.0
|
CG2
|
A:THR63
|
4.7
|
34.8
|
1.0
|
|
Thallium binding site 5 out
of 11 in 8ctx
Go back to
Thallium Binding Sites List in 8ctx
Thallium binding site 5 out
of 11 in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -K+,Tl+ Complex
Mono view
Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 5 of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -K+,Tl+ Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Tl205
b:68.1
occ:0.24
|
O
|
A:ASP68
|
2.7
|
44.5
|
1.0
|
CE1
|
A:PHE69
|
3.2
|
47.9
|
1.0
|
HE1
|
A:PHE69
|
3.3
|
57.6
|
1.0
|
CD1
|
A:PHE69
|
3.4
|
55.3
|
1.0
|
CZ
|
A:PHE69
|
3.5
|
43.4
|
1.0
|
HD1
|
A:PHE69
|
3.6
|
66.4
|
1.0
|
C
|
A:ASP68
|
3.7
|
53.2
|
1.0
|
HZ
|
A:PHE69
|
3.9
|
52.1
|
1.0
|
CG
|
A:PHE69
|
3.9
|
53.7
|
1.0
|
HB2
|
A:ASP68
|
4.0
|
70.6
|
1.0
|
HA
|
A:PHE69
|
4.0
|
54.0
|
1.0
|
CE2
|
A:PHE69
|
4.0
|
49.6
|
1.0
|
CD2
|
A:PHE69
|
4.2
|
48.1
|
1.0
|
N
|
A:PHE69
|
4.4
|
46.9
|
1.0
|
CA
|
A:PHE69
|
4.6
|
45.0
|
1.0
|
HE2
|
A:PHE69
|
4.6
|
59.5
|
1.0
|
CA
|
A:ASP68
|
4.7
|
51.9
|
1.0
|
HA
|
A:ASP68
|
4.7
|
62.3
|
1.0
|
CB
|
A:ASP68
|
4.7
|
58.8
|
1.0
|
CB
|
A:PHE69
|
4.8
|
42.7
|
1.0
|
HD2
|
A:PHE69
|
4.9
|
57.8
|
1.0
|
|
Thallium binding site 6 out
of 11 in 8ctx
Go back to
Thallium Binding Sites List in 8ctx
Thallium binding site 6 out
of 11 in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -K+,Tl+ Complex
Mono view
Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 6 of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -K+,Tl+ Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Tl206
b:65.0
occ:0.16
|
O
|
A:HOH308
|
2.4
|
79.9
|
1.0
|
K
|
A:K207
|
2.8
|
76.6
|
0.2
|
O
|
A:TYR66
|
3.0
|
31.1
|
1.0
|
HA
|
A:ASP68
|
3.4
|
62.3
|
1.0
|
C
|
A:GLY67
|
3.5
|
58.6
|
1.0
|
N
|
A:ASP68
|
3.5
|
44.7
|
1.0
|
O
|
A:GLY67
|
3.7
|
43.7
|
1.0
|
HB3
|
A:ASP68
|
3.8
|
70.6
|
1.0
|
H
|
A:ASP68
|
3.8
|
53.7
|
1.0
|
HA3
|
A:GLY67
|
3.9
|
47.5
|
1.0
|
C
|
A:TYR66
|
3.9
|
46.5
|
1.0
|
CA
|
A:ASP68
|
3.9
|
51.9
|
1.0
|
K
|
A:K208
|
4.0
|
95.0
|
0.2
|
CA
|
A:GLY67
|
4.1
|
39.5
|
1.0
|
HB3
|
A:TYR66
|
4.3
|
36.5
|
1.0
|
CB
|
A:ASP68
|
4.4
|
58.8
|
1.0
|
N
|
A:GLY67
|
4.4
|
35.6
|
1.0
|
TL
|
A:TL201
|
4.8
|
38.5
|
0.1
|
CB
|
A:TYR66
|
5.0
|
30.4
|
1.0
|
CA
|
A:TYR66
|
5.0
|
38.7
|
1.0
|
HB2
|
A:ASP68
|
5.0
|
70.6
|
1.0
|
|
Thallium binding site 7 out
of 11 in 8ctx
Go back to
Thallium Binding Sites List in 8ctx
Thallium binding site 7 out
of 11 in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -K+,Tl+ Complex
Mono view
Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 7 of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -K+,Tl+ Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Tl201
b:57.3
occ:0.10
|
O
|
B:TYR66
|
2.6
|
67.6
|
1.0
|
O
|
B:GLY65
|
3.0
|
55.2
|
1.0
|
C
|
B:TYR66
|
3.4
|
65.2
|
1.0
|
TL
|
B:TL202
|
3.6
|
48.5
|
0.0
|
HA3
|
B:GLY67
|
3.7
|
83.8
|
1.0
|
HA
|
B:TYR66
|
3.8
|
70.6
|
1.0
|
C
|
B:GLY65
|
4.2
|
49.2
|
1.0
|
CA
|
B:TYR66
|
4.2
|
58.8
|
1.0
|
N
|
B:GLY67
|
4.2
|
57.6
|
1.0
|
CA
|
B:GLY67
|
4.4
|
69.8
|
1.0
|
N
|
B:TYR66
|
4.7
|
47.8
|
1.0
|
O
|
B:HOH303
|
4.8
|
76.3
|
1.0
|
HA2
|
B:GLY67
|
4.9
|
83.8
|
1.0
|
H
|
B:GLY67
|
5.0
|
69.1
|
1.0
|
|
Thallium binding site 8 out
of 11 in 8ctx
Go back to
Thallium Binding Sites List in 8ctx
Thallium binding site 8 out
of 11 in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -K+,Tl+ Complex
Mono view
Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 8 of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -K+,Tl+ Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Tl202
b:48.5
occ:0.04
|
O
|
B:GLY65
|
2.5
|
55.2
|
1.0
|
O
|
B:VAL64
|
2.7
|
51.1
|
1.0
|
TL
|
B:TL203
|
3.3
|
45.7
|
0.1
|
HA3
|
B:GLY65
|
3.3
|
52.6
|
1.0
|
C
|
B:GLY65
|
3.4
|
49.2
|
1.0
|
TL
|
B:TL201
|
3.6
|
57.3
|
0.1
|
CA
|
B:GLY65
|
3.7
|
43.8
|
1.0
|
C
|
B:VAL64
|
3.8
|
44.1
|
1.0
|
N
|
B:GLY65
|
4.3
|
47.2
|
1.0
|
N
|
B:TYR66
|
4.4
|
47.8
|
1.0
|
HA
|
B:TYR66
|
4.4
|
70.6
|
1.0
|
HA2
|
B:GLY65
|
4.6
|
52.6
|
1.0
|
CA
|
B:TYR66
|
4.9
|
58.8
|
1.0
|
|
Thallium binding site 9 out
of 11 in 8ctx
Go back to
Thallium Binding Sites List in 8ctx
Thallium binding site 9 out
of 11 in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -K+,Tl+ Complex
Mono view
Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 9 of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -K+,Tl+ Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Tl203
b:45.7
occ:0.06
|
O
|
B:THR63
|
2.6
|
45.7
|
1.0
|
O
|
B:VAL64
|
2.6
|
51.1
|
1.0
|
TL
|
B:TL204
|
3.3
|
43.5
|
0.1
|
TL
|
B:TL202
|
3.3
|
48.5
|
0.0
|
C
|
B:VAL64
|
3.4
|
44.1
|
1.0
|
HA
|
B:VAL64
|
3.5
|
49.7
|
1.0
|
C
|
B:THR63
|
3.8
|
46.5
|
1.0
|
CA
|
B:VAL64
|
3.9
|
41.4
|
1.0
|
HA3
|
B:GLY65
|
4.2
|
52.6
|
1.0
|
N
|
B:VAL64
|
4.3
|
45.6
|
1.0
|
N
|
B:GLY65
|
4.4
|
47.2
|
1.0
|
HB
|
B:THR63
|
4.5
|
50.0
|
1.0
|
CA
|
B:GLY65
|
4.8
|
43.8
|
1.0
|
CA
|
B:THR63
|
4.9
|
40.3
|
1.0
|
|
Thallium binding site 10 out
of 11 in 8ctx
Go back to
Thallium Binding Sites List in 8ctx
Thallium binding site 10 out
of 11 in the Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -K+,Tl+ Complex
Mono view
Stereo pair view
|
A full contact list of Thallium with other atoms in the Tl binding
site number 10 of Crystal Structure of A K+ Selective Nak Mutant (NAK2K) -K+,Tl+ Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Tl204
b:43.5
occ:0.07
|
O
|
B:THR63
|
2.7
|
45.7
|
1.0
|
OG1
|
B:THR63
|
2.9
|
43.1
|
1.0
|
HB
|
B:THR63
|
3.1
|
50.0
|
1.0
|
TL
|
B:TL203
|
3.3
|
45.7
|
0.1
|
CB
|
B:THR63
|
3.5
|
41.6
|
1.0
|
C
|
B:THR63
|
3.7
|
46.5
|
1.0
|
CA
|
B:THR63
|
4.3
|
40.3
|
1.0
|
HA
|
B:VAL64
|
4.4
|
49.7
|
1.0
|
HG21
|
B:THR63
|
4.7
|
56.1
|
1.0
|
CG2
|
B:THR63
|
4.7
|
46.7
|
1.0
|
N
|
B:VAL64
|
4.8
|
45.6
|
1.0
|
HA
|
B:THR63
|
4.8
|
48.4
|
1.0
|
|
Reference:
B.Lee,
K.I.White,
M.A.Socolich,
M.A.Klureza,
R.Henning,
V.Srajer,
R.Ranganathan,
D.Hekstra.
Direct Visualization of Electric Field-Stimulated Ion Conduction in A Potassium Channel To Be Published.
Page generated: Fri Oct 11 10:29:53 2024
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